PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100202.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 506aa    MW: 56243.7 Da    PI: 6.7961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100202.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12326371454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  XP_010100202.1 326 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVVYINEL 371
                     799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-4129215IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.869322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17323388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.51E-13325375No hitNo description
Gene3DG3DSA:4.10.280.108.0E-17326383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-10326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEEIISSCSS SSLVPISQQD HHQTKPTIQQ RLQFILQTRP EWWVYSIFWQ AYKDVTIGSK  60
GDVSLSWNGG YFRGTKNDVA RKGNDVVETV FGFDLEKKAS TTSRVGDIQA LFGNDSGQEM  120
DVDVLSDIEW FYTVSLSRTF AAESGAIGRS FSSGAYVWLT GSEELLLYEC ERVKEARMHG  180
IQTLVCIATP NGVLELGSSD LIKEDWSLVQ LAKSLLGSSG VPINNISPNI IQRQNSIQNQ  240
ISNIRDNFPL LDIGIMPSGS GRNESTLEDP NKQPEDIAKK HVVTGGSSSD SGPSDSDGYF  300
ASAITGGNRI KKRGRKPVIG NSLPVNHVEA ERQRREKLNH RFYALRSVVP NVSKMDKASL  360
LADAVVYINE LKSKINELET QVHLSQSNRP LKMGITMCNS TPKFESQSTY NIVEHKRKYS  420
SYGSVGAMEV DVKIVGTEAM IRVQCPDVNY PPARLMNALR DLEFQILHVS VSSVKELVLQ  480
DVVVRVPDRF PSEEAMRMAI VRLMQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-25252166192Transcription factor MYC3
4rqw_B3e-25252166192Transcription factor MYC3
4rs9_A3e-25252166192Transcription factor MYC3
4yz6_A3e-25252166192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100202.10.0hypothetical protein L484_015347
TrEMBLW9RC230.0W9RC23_9R
STRINGPOPTR_0001s11400.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.19e-48bHLH family protein